Skiena Skiena The Algorithm Design Manual An Introduction to Bioinformatics Algorithms

Skiena's Computational Biology
Lectures

Steven Skiena
Dept. of Computer Science
Stony Brook University

Below are video and lecture sides 2010 Computational Biology course.

Topic
1 Introduction
2 Biology for Computer Scientists
3 Computer Science for Biologists (bad video)
4 Sequence Assembly
5 Introduction to Suffix Trees
6 Suffix Trees in Action
7 Suffix Arrays and Assembly
8 String Matching Algorithms
9 Projects/Approximate String Matching
10 Dynamic Programming
11 Smith-Waterman Algorithm
12 Space-Efficient Dynamic Programming
13 Introduction to Gene Finding
14 Markov Models
15 Hidden Markov Models (bad audio)
16 Training, Testing, and Topologies
17 Introduction to Microarrays
18 Clustering Algorithms
19 Graph Theoretic-Clustering
20 RNA Folding
21 Protein Folding
22 Phylogenic Trees
23 Distance-Based Phylogeny
24 Feature-Based Phylogeny (bad audio)
2010
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video audio (part 2)slides